TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelO selenoproteinO homolog [Ectocarpus siliculosus]
         (672 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.8 of Capsaspora owczarzaki ATCC 30864                   138   9e-61

>supercontig_1.8 of Capsaspora owczarzaki ATCC 30864
          Length = 1512001

 Score =  138 bits (347), Expect(2) = 9e-61
 Identities = 129/455 (28%), Positives = 192/455 (42%), Gaps = 74/455 (16%)
 Frame = -3

Query: 292     SIVTRLAPTFLRFGSFEI-FKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFPGAAAAGP 350
               +IV RLA +++RFGSFE  F  + P+  +            ++++Y I   FP       
Sbjct: 1024289 AIVCRLAQSWIRFGSFEHQFYFKQPKVLK------------RLVDYTITHHFPSYLETAM 1024146

Query: 351     EGS--KARYLAMYEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTI----------- 397
                G+  + RYLA Y E  R TA  +A WQ VGF  GVLNTDN SILGL+I           
Sbjct: 1024145 PGASDEDRYLAFYREVARRTAHTIALWQAVGFVGGVLNTDNFSILGLSIGTVVGRVRPVA 1023966

Query: 398     -------------------------------DYGPYGFMDFFDPKFVPNGSDGGGRYSYE 426
                                              DYGP+ FM+ FD   V N +D  G Y+Y 
Sbjct: 1023965 PTNKHSVPKTMPFWATPPLAHCAWLADSFLTDYGPFAFMEAFDDDAVFNHTDSEGMYAYG 1023786

Query: 427     RQPEMCKWNLHKFAEAVAPALPLSDSTAALEKYDGLFKGYYEEGMRRKLGLFSV----EE 482
               RQP++  WNL + A A++P L +  +   L +Y  +F   Y   MR KLGL +     +E
Sbjct: 1023785 RQPDVGHWNLSRLAIALSPVLEVERAREVLLEYPSMFHKAYVAKMRSKLGLLAALPDKDE 1023606

Query: 483     DDDGLFESLFATM-----ADTSADFTGTFRELAQLVPG-GDVDAVSKALAAQCAGPKIKA 536
                D  L + L   M       + AD+T  FR L++  P     D  S+      +  K+  
Sbjct: 1023605 SDAALVKELLDAMQSQPGTTSGADWTIFFRTLSEAAPSLSATDEASQQQIEADSNLKLAT 1023426

Query: 537     KALRRAVDIGRPSIPPQQLQGLW-AMAQENPEALAQRFSAPKD-------AVIAELREEM 588
                  R+A++        +++   W A  Q+    LA+  +A ++        ++  L   +
Sbjct: 1023425 TRARKALEC---MFQDEKVSSKWSAWRQKYTARLAEDSTAVREHSKLGGGLLLPGLSSSL 1023255

Query: 589     QK--------LSNYDAAQQRLKDMEALEEDGXEAIEDAEKGDFSGVQRVLRLLESPYD-- 638
                         L+  D  +Q             +AI+ A   DF+ V ++ +LL+ PYD  
Sbjct: 1023254 DASSTALAIGLARRDVMKQHNPKYILRTWMAQKAIDAATANDFTVVDQLFKLLQRPYDDQ 1023075

Query: 639     PPADDGEGSSSPGGKDYLRATPDWAADLVC-TCSS 672
               P  DD            + A  D A   VC +CSS
Sbjct: 1023074 PEFDD------------VYARQDTATGPVCLSCSS 1023006



 Score =  115 bits (288), Expect(2) = 9e-61
 Identities = 86/238 (36%), Positives = 104/238 (43%), Gaps = 80/238 (33%)
 Frame = -1

Query: 127     VRRVENACFSIVAPDPVVKPVMVAASNSALGLLGLAAEEGQREDAAEYFSGNKLMPGAQP 186
               VR+V   C+S   P P   P +V A+  A  LL L   E    +  +  SG  L   A+P
Sbjct: 1025098 VRQVRGVCYSNAVPTPSTNPRLVHANAGAAALLDLNPSELATPEFVDVVSGCALHSTAKP 1024919

Query: 187     HAHAYCG-----------------------HQFGSFAGQLGDGAAMY------------- 210
                A  Y G                       HQFGSFAGQLGDG A+              
Sbjct: 1024918 IALTYAGNNANCVNVPVMPQQLTAIPLRPGHQFGSFAGQLGDGRAIR*VAILPLLIFENN 1024739

Query: 211     ----------------LGEVEGPSG-RWEIQFKGAGLTPYSRSADGR------------- 240
                               LGEV    G RWE+Q KGAG+TPYSR ADGR             
Sbjct: 1024738 NHTHSLARHSSPVTPSLGEVVNHHGERWEMQLKGAGMTPYSRFADGRAVSVGFNRSIRCC 1024559

Query: 241     --------------KVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTG 284
                             KVLRSSIRE++CSEAM+ LG+PT+RA +LV +D KV R+    G
Sbjct: 1024558 FRLLMTFSCPCCWLKVLRSSIREYMCSEAMNALGVPTSRALSLVVTDEKVVRETVEPG 1024385



 Score =  103 bits (258), Expect = 3e-22
 Identities = 108/423 (25%), Positives = 164/423 (38%), Gaps = 56/423 (13%)
 Frame = +3

Query: 306    SFEIFKPRDPRTGRDGPSAGNDALRL-QMLEYAIGRF-------FPGAAAAGPEGSKARY 357
              S ++F  R P T  +    G+  LR  +M+   + +F          AA    E     Y
Sbjct: 786132 SQQLFSKRTPPTTFEHLRQGSPLLRAYRMVADFVSQFNWARVSDAGWAAQLLAEEDPVDY 786311

Query: 358    LAMYEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFV---- 413
                 +   V +TA LVA WQ  GF HGV NTDN SILGLT+DYGP+ FM+ ++P  V    
Sbjct: 786312 SRWFVGVVNNTAWLVANWQAYGFAHGVCNTDNFSILGLTLDYGPFAFMEAYNPGSVFAGC 786491

Query: 414    -------------------------------------------PNGSDGGGRYSYERQPE 430
                                                         PN SD    Y++ +Q  
Sbjct: 786492 QSVPFDNENDARTLTFGCTLLPTFDWLLLLLLFLFVSIPTDLRPNASDESDMYTFSQQSS 786671

Query: 431    MCKWNLHKFAEAVAPALPLSDSTAALEKYDGLFKGYYEEGMRRKLGLFSVEEDDDGLFES 490
              +   NL   A+A+A  +P  D   AL  +  L + YY + MRR+LGL + E+ D  + + 
Sbjct: 786672 VAYTNLMWLAQALAELIPEQDRRTALGAFARLHEEYYLQVMRRRLGLDNEEDIDAHIVQE 786851

Query: 491    LFATMADTSADFTGTFRELAQLVPGGDVDAVSKALAAQCAGPKIKAKALRRAVDIGRPSI 550
                  +  + AD++ + R LA +    D    +K +                         
Sbjct: 786852 FKRLLFLSKADYSLSLRFLADI---RDTHVANKTV------------------------- 786947

Query: 551    PPQQLQGLWAMAQENPEALAQRFSA-PKDAVIAELREEMQKLSNYDAAQQRLKDMEALEE 609
               P+    L  +AQ  PE      S   K       R+ +      +A   R      + +
Sbjct: 786948 -PEHAWALKDIAQAEPEDFYSWLSMWYKRIHRNHNRDPLVTFEAMNAVNPRYILRNWMAQ 787124

Query: 610    DGXEAIEDAEKGDFSGVQRVLRLLESPYDPPADDGEGSSSPGGKDYLRATPDWAADLVCT 669
                 E  E    G+   VQR+L +L+ P++      + + + G   Y    P WAA+L  +
Sbjct: 787125 QAIE--EYLGDGNSQSVQRLLDVLQQPFEV----NDWAEAAG---YASRPPSWAAELRVS 787277

Query: 670    CSS 672
              CSS
Sbjct: 787278 CSS 787286



 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 46/82 (56%), Positives = 59/82 (71%)
 Frame = +3

Query: 229    GLTPYSRSADGRKVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQ 288
              G TP+SR  DGR V+RSS+RE L SEA++ LGIPTTRA ALV  D  V RD    G+ + 
Sbjct: 785697 GRTPFSRDGDGRAVVRSSVRELLASEALYALGIPTTRALALVAGDETVLRDPLGDGHPVP 785876

Query: 289    ERASIVTRLAPTFLRFGSFEIF 310
              ER +++ R +P++LRFGSFE F
Sbjct: 785877 ERTAVLLRASPSWLRFGSFERF 785942



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 75/240 (31%), Positives = 99/240 (41%), Gaps = 46/240 (19%)
 Frame = +2

Query: 49     SSTAAFTYPAAATAAAATASVSHSNRNDRVVTARPASRTAMSTAVDAAATCSSSTLDTLP 108
              +STAA     A  AAAATA  +           RP+     + A DA +  ++ TL    
Sbjct: 784922 ASTAAAATTTATVAAAATAPSTEGK-------TRPSQFA--NWAFDAHSRITADTLPVRT 785074

Query: 109    FDNRVIRELPVDPITDNYVRRVENACFSIVAPDPVVKPVMVAASNSAL-GLLGL--AAEE 165
               D R     P D     YV  V        +P P+  P +VA S+ A+  +L L  AA  
Sbjct: 785075 VDARAAHA-PSDIPDAVYVAGV--------SPQPLAHPRLVALSDRAVESILNLNPAAIR 785227

Query: 166    GQREDAA-----EYFSGNKLMP-GAQPHAHAYCGHQ------------------------ 195
               + + AA     E F G   +P  A+P AH Y GHQ                        
Sbjct: 785228 AEADSAAAASLFERFVGGSYLPRNARPMAHNYAGHQVRLDRALPYCSPKKAVSVCFIAQL 785407

Query: 196    ------------FGSFAGQLGDGAAMYLGEVEGPSGR-WEIQFKGAGLTPYSRSADGRKV 242
                          FGS+AGQLGDG A+ LGE    SG+ WE+Q KG+G       +D RK+
Sbjct: 785408 VFFFAFCLFGE*FGSWAGQLGDGRAILLGETTSRSGQHWELQLKGSG------KSDNRKL 785569


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,766,422
Number of Sequences: 89
Number of extensions: 474325
Number of successful extensions: 10640
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 9678
length of query: 672
length of database: 9,347,932
effective HSP length: 106
effective length of query: 566
effective length of database: 9,338,498
effective search space: 5285589868
effective search space used: 5285589868
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)